Index

A | C | E | G | H | I | L | M | N | P | Q | R | S | X

A

add_coords() (pyImagingMSpec.ion_datacube.ion_datacube method)
add_xic() (pyImagingMSpec.ion_datacube.ion_datacube method)
apply_image_processing() (pyImagingMSpec.ion_datacube.ion_datacube method)

C

calculate_bounding_box() (pyImagingMSpec.ion_datacube.ion_datacube method)
centroid_IMS() (in module pyImagingMSpec.convert.sl)
centroid_imzml() (in module pyImagingMSpec.convert.sl)
coord_to_index() (pyImagingMSpec.ion_datacube.ion_datacube method)

E

empty_datacube() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)

G

generate_histogram_axis() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
generate_summary_spectrum() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_coords() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_coords_hdf5() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_coords_imzml() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_histogram_axis() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_ion_image() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_spectrum() (pyImagingMSpec.convert.sl.slFile method)
(pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_spectrum_hdf5() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_spectrum_imzml() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_step_size() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)
get_summary_image() (pyImagingMSpec.inMemoryIMS.inMemoryIMS method)

H

hdf5_centroids_IMS() (in module pyImagingMSpec.convert.hdf5)
hot_spot_removal() (in module pyImagingMSpec.smoothing)

I

image_to_xic() (pyImagingMSpec.ion_datacube.ion_datacube method)
inMemoryIMS (class in pyImagingMSpec.inMemoryIMS)
interpolate() (in module pyImagingMSpec.imutils)
ion_datacube (class in pyImagingMSpec.ion_datacube)
isotope_image_correlation() (in module pyImagingMSpec.image_measures)
isotope_pattern_match() (in module pyImagingMSpec.image_measures)

L

load_file() (pyImagingMSpec.convert.sl.slFile method)
(pyImagingMSpec.inMemoryIMS.inMemoryIMS method)

M

measure_of_chaos() (in module pyImagingMSpec.image_measures)
measure_of_chaos_fit() (in module pyImagingMSpec.image_measures)
median() (in module pyImagingMSpec.smoothing)

N

nan_to_zero() (in module pyImagingMSpec.imutils)

P

pyImagingMSpec (module)
pyImagingMSpec.convert (module)
pyImagingMSpec.convert.hdf5 (module)
pyImagingMSpec.convert.imzml (module)
pyImagingMSpec.convert.sl (module)
pyImagingMSpec.image_measures (module)
pyImagingMSpec.imutils (module)
pyImagingMSpec.inMemoryIMS (module)
pyImagingMSpec.ion_datacube (module)
pyImagingMSpec.smoothing (module)

Q

quantile_threshold() (in module pyImagingMSpec.imutils)

R

remove_xic() (pyImagingMSpec.ion_datacube.ion_datacube method)

S

slFile (class in pyImagingMSpec.convert.sl)
smooth_spectrum() (in module pyImagingMSpec.convert.hdf5)

X

xic_to_image() (pyImagingMSpec.ion_datacube.ion_datacube method)