pyImagingMSpec.convert package¶

Submodules¶

pyImagingMSpec.convert.h5 module¶

pyImagingMSpec.convert.hdf5 module¶

pyImagingMSpec.convert.hdf5.hdf5_centroids_IMS(input_filename, output_filename)[source]¶

pyImagingMSpec.convert.hdf5.smooth_spectrum(mzs, intensities, smoothMethod)[source]¶

pyImagingMSpec.convert.imzml module¶

pyImagingMSpec.convert.sl module¶

pyImagingMSpec.convert.sl.centroid_IMS(input_filename, output_filename, instrumentInfo={}, sharedDataInfo={})[source]¶

pyImagingMSpec.convert.sl.centroid_imzml(input_filename, output_filename, step=[], apodization=False, w_size=10, min_intensity=1e-05)[source]¶

class pyImagingMSpec.convert.sl.slFile(input_filename)[source]¶

get_spectrum(index)[source]¶

load_file(input_filename)[source]¶